Connect PubMed and Codefresh
Integrate PubMed with Codefresh to automate workflows, sync data between apps, and eliminate repetitive tasks with AI-powered automation.
Create Project in Codefresh when New Article Matching Search in Pubmed
Create Teams in Codefresh when New Article Matching Search in Pubmed
Create Annotaions in Codefresh when New Article Matching Search in Pubmed
Search Project in Codefresh when New Article Matching Search in Pubmed
Delete a Project from Codefresh when New Article Matching Search in Pubmed
Popular PubMed + Codefresh flows
Start from a real workflow other teams are already running.
Choose a trigger
PubMed
When this happens...
New Article Matching Search
Choose an action
Codefresh
Automatically do this!
Create Project
Create Teams
Create Annotaions
Search Project
Delete a Project
List Build
Create Execution Context
Create Agent
Create Project in Codefresh when New Article Matching Search in Pubmed
Use this flowCreate Teams in Codefresh when New Article Matching Search in Pubmed
Use this flowCreate Annotaions in Codefresh when New Article Matching Search in Pubmed
Use this flowSearch Project in Codefresh when New Article Matching Search in Pubmed
Use this flowDelete a Project from Codefresh when New Article Matching Search in Pubmed
Use this flowList Build in Codefresh when New Article Matching Search in Pubmed
Use this flowCreate Execution Context in Codefresh when New Article Matching Search in Pubmed
Use this flowCreate Agent in Codefresh when New Article Matching Search in Pubmed
Use this flowMatch Citation in Pubmed when New Project in Codefresh
Use this flowFind Related Articles in Pubmed when New Project in Codefresh
Use this flowSupported Triggers & Actions
Everything you can automate between PubMed and Codefresh.
When this happensTriggers
A trigger is an event that starts a workflow.
New Article Matching Search
Runs when a new article matching your PubMed search query is added to PubMed.
New Project
Triggers when a new project is created in scheduled time.
Do thisActions
Action is the task that follows automatically within your PubMed integrations.
Match Citation
Find the PubMed ID (PMID) of an article from its journal, year, volume, page and author.
Find Related Articles
Find similar, citing, referenced or review articles linked to a PubMed article.
Get Article
Get a PubMed article by PMID with title, abstract, authors, journal, DOI and MeSH terms.
Search Articles
Search PubMed articles by keywords, authors or fields, with date filters and optional article details.
Create Project
Creates a new project.
Create Teams
Create a new Codefresh team, add specified users, and apply optional tags.
Learn how to build your first workflow
Follow a simple walkthrough to create, test, and launch your first automation.
- 1
Connect your apps
Link the apps you want to automate.
- 2
Configure your workflow
Set up triggers, actions, and map your data.
- 3
Test & publish
Test your workflow and publish it.
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Just describe the task in plain English. viaSocket AI selects the right apps, builds the workflow, maps the fields, and prepares everything for review before you publish.
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About PubMed
PubMed is a free search platform for biomedical and life sciences literature, helping users discover research articles, citations, and abstracts from trusted scientific sources.
Learn more
About Codefresh
Codefresh is a modern DevOps platform that streamlines software development and delivery. It offers powerful CI/CD tools to help developers build, test, and deploy applications efficiently, simplifying complex workflows for teams aiming to enhance their DevOps practices.
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Frequently Asked Questions
Sign up for a free viaSocket account, then authorize both your PubMed and Codefresh accounts. From there, pick a trigger in one app and an action in the other. Your first workflow can be live in under five minutes.
Yes. viaSocket uses instant triggers where available, so data moves between PubMed and Codefresh as soon as the event happens. Scheduled polling triggers run at a maximum interval of 15 minutes.
Yes. You can map specific fields, apply filters to skip records that do not match your conditions, and transform values before they reach Codefresh. No coding required.
Yes. You can set up a workflow where PubMed triggers actions in Codefresh, and a separate workflow where Codefresh triggers actions in PubMed. Both run independently and in real time.
viaSocket logs every run so you can see exactly what succeeded and what failed. Failed tasks can be retried from the dashboard without re-configuring the workflow.
Yes, there is a free plan that covers basic workflows between PubMed and Codefresh. Paid plans unlock higher task limits, faster polling, and advanced features like multi-step workflows and conditional logic.
No. The entire PubMed and Codefresh integration is built through a visual, point-and-click interface. Code blocks are available if you want them, but they are never required.
